# Maintained Software Packages

This is a list of the all RCS installed software and toolchains. To learn more about a specific package please run "module spider PACKAGENAME", which will give you information about the package as well as what other modules must be loaded to get access to the software.

```
module spider ANTLR
```

| Name             | Versions                                   |
| ---------------- | ------------------------------------------ |
| ANTLR            | ANTLR/2.7.7-Java-11, ANTLR/2.7.7-Java-17   |
| AUGUSTUS         | AUGUSTUS/3.5.0                             |
| Autoconf         | Autoconf/2.71                              |
| Automake         | Automake/1.16.5                            |
| Automake         | GNU Standards-compliant Makefile generator |
| Autotools        | Autotools/20220317                         |
| BamTools         | BamTools/2.5.2                             |
| BCFtools         | BCFtools/1.17                              |
| binutils         | binutils/2.38, binutils/2.40               |
| binutils         | GNU binary utilities                       |
| BioPerl          | BioPerl/1.7.8                              |
| Bison            | Bison/3.8.2                                |
| BLAST+           | BLAST+/2.13.0                              |
| BLIS             | BLIS/0.9.0                                 |
| Boost            | Boost/1.79.0                               |
| Boost.MPI        | Boost.MPI/1.79.0                           |
| Brotli           | Brotli/1.0.9                               |
| BWA              | BWA/0.7.17                                 |
| bzip2            | bzip2/1.0.8                                |
| cairo            | cairo/1.17.4                               |
| CDO              | CDO/2.0.5, CDO/2.2.2                       |
| CMake            | CMake/3.23.1, CMake/3.26.3                 |
| CUDA             | CUDA/11.7.0                                |
| cURL             | cURL/7.83.0, cURL/8.0.1                    |
| cutadapt         | cutadapt/4.2                               |
| DB\_File         | DB\_File/1.858                             |
| Doxygen          | Doxygen/1.9.7                              |
| ecBuild          | ecBuild/3.8.0                              |
| ecCodes          | ecCodes/2.24.2, ecCodes/2.31.0             |
| ESMF             | ESMF/8.3.0, ESMF/8.4.2                     |
| Exonerate        | Exonerate/2.4.0                            |
| expat            | expat/2.4.8, expat/2.5.0                   |
| FFTW             | FFTW/3.3.10                                |
| FFTW.MPI         | FFTW.MPI/3.3.10                            |
| flex             | flex/2.6.4                                 |
| FlexiBLAS        | FlexiBLAS/3.2.0                            |
| fontconfig       | fontconfig/2.14.0, fontconfig/2.14.2       |
| foss             | foss/2022a                                 |
| gaussian         | gaussian/16.C.01                           |
| GCC              | GCC/11.3.0, GCC/12.3.0                     |
| GCCcore          | GCCcore/11.3.0, GCCcore/12.3.0             |
| GDAL             | GDAL/3.5.0                                 |
| GeneMark-ET      | GeneMark-ET/4.71                           |
| GEOS             | GEOS/3.10.3                                |
| gettext          | gettext/0.21                               |
| Ghostscript      | Ghostscript/10.0.0                         |
| git              | git/2.36.0-nodocs                          |
| GLib             | GLib/2.72.1                                |
| gompi            | gompi/2022a                                |
| groff            | groff/1.22.4                               |
| GSL              | GSL/2.7                                    |
| gzip             | gzip/1.12                                  |
| h5py             | h5py/3.7.0                                 |
| HarfBuzz         | HarfBuzz/5.3.1                             |
| HDF              | HDF/4.2.15                                 |
| HDF5             | HDF5/1.13.1, HDF5/1.14.0                   |
| help2man         | help2man/1.49.2                            |
| HMMER            | HMMER/3.3.2                                |
| HTSlib           | HTSlib/1.17                                |
| hwloc            | hwloc/2.7.1                                |
| iimpi            | iimpi/2023a                                |
| ImageMagick      | ImageMagick/7.1.0-53                       |
| imkl             | imkl/2023.1.0                              |
| imkl-FFTW        | imkl-FFTW/2022.1.0, imkl-FFTW/2023.1.0     |
| impi             | impi/2021.6.0, impi/2021.9.0               |
| intel            | intel/2022a, intel/2023a                   |
| intel-compilers  | intel-compilers/2023.1.0                   |
| ISA-L            | ISA-L/2.30.0                               |
| JasPer           | JasPer/2.0.33, JasPer/4.0.0                |
| Java             | Java/11.0.16, Java/17.0.6                  |
| LAME             | LAME/3.100                                 |
| LAPACK           | LAPACK/3.10.1                              |
| libaec           | libaec/1.0.6                               |
| libdap           | libdap/3.20.8, libdap/3.20.11              |
| libfabric        | libfabric/1.15.1                           |
| libffi           | libffi/3.4.2                               |
| libgeotiff       | libgeotiff/1.7.1                           |
| libgit2          | libgit2/1.5.0                              |
| libreadline      | libreadline/8.1.2                          |
| LibTIFF          | LibTIFF/4.3.0, LibTIFF/4.5.0               |
| libtool          | libtool/2.4.7                              |
| LittleCMS        | LittleCMS/2.14                             |
| LLVM             | LLVM/15.0.5                                |
| LMDB             | LMDB/0.9.29                                |
| lpsolve          | lpsolve/5.5.2.11                           |
| lz4              | lz4/1.9.3, lz4/1.9.4                       |
| M4               | M4/1.4.19                                  |
| MAKER            | MAKER/3.01.04                              |
| MATLAB           | MATLAB/R2023b                              |
| METIS            | METIS/5.1.0                                |
| MPFR             | MPFR/4.2.0                                 |
| mpi4py           | mpi4py/3.1.4                               |
| ncbi-blast+      | ncbi-blast+/2.8.1                          |
| NCO              | NCO/5.0.3, NCO/5.1.3                       |
| ncurses          | ncurses/6.2, ncurses/6.3, ncurses/6.4      |
| ncview           | ncview/2.1.8                               |
| netCDF           | netCDF/4.9.0, netCDF/4.9.2                 |
| netCDF-C++4      | netCDF-C++4/4.3.1                          |
| netCDF-Fortran   | netCDF-Fortran/4.5.4, netCDF-Fortran/4.6.1 |
| nodejs           | nodejs/18.12.1                             |
| numactl          | numactl/2.0.14                             |
| OpenBLAS         | OpenBLAS/0.3.20                            |
| OpenMPI          | OpenMPI/4.1.4                              |
| OpenSSL          | OpenSSL/1.1                                |
| Pango            | Pango/1.50.12                              |
| ParaView         | ParaView/5.11.1                            |
| PCRE2            | PCRE2/10.40                                |
| Perl             | Perl/5.34.1, Perl/5.36.1                   |
| Perl-bundle-CPAN | Perl-bundle-CPAN/5.36.1                    |
| pigz             | pigz/2.7                                   |
| pkgconf          | pkgconf/1.8.0, pkgconf/1.9.5               |
| pkgconfig        | pkgconfig/1.5.5-python                     |
| pmi              | pmi/pmix-x86\_64                           |
| PMIx             | PMIx/4.1.2                                 |
| PROJ             | PROJ/9.0.0, PROJ/9.2.0                     |
| pybind11         | pybind11/2.9.2                             |
| Python           | Python/3.10.4, Python/3.11.3               |
| python-isal      | python-isal/1.1.0                          |
| R                | R/4.2.2                                    |
| RepeatMasker     | RepeatMasker/4.1.4                         |
| RMBlast          | RMBlast/2.13.0                             |
| Rust             | Rust/1.60.0                                |
| SAMtools         | SAMtools/1.17                              |
| ScaLAPACK        | ScaLAPACK/2.2.0-fb                         |
| SciPy-bundle     | SciPy-bundle/2022.05                       |
| SCons            | SCons/4.2.0                                |
| Serf             | Serf/1.3.9                                 |
| sintr            | sintr/1.0                                  |
| slurm            | slurm/22.05.4                              |
| SNAP-HMM         | SNAP-HMM/20221022                          |
| SQLite           | SQL Database Engine in a C Library         |
| SQLite           | SQLite/3.38.3, SQLite/3.42.0               |
| Subversion       | Subversion/1.14.1                          |
| SuiteSparse      | SuiteSparse/5.13.0-METIS-5.1.0             |
| SWIG             | SWIG/4.0.2                                 |
| Szip             | Szip/2.1.1                                 |
| Tk               | Tk/8.6.12                                  |
| totalview        | totalview/2023.1.6                         |
| TRF              | TRF/4.09.1                                 |
| UCX              | UCX/1.12.1                                 |
| UDUNITS          | UDUNITS/2.2.28                             |
| UnZip            | UnZip/6.0                                  |
| util-linux       | util-linux/2.38, util-linux/2.39           |
| Vivado           | Vivado/2023.2                              |
| X11              | X11/20220504, X11/20230603                 |
| XML-LibXML       | XML-LibXML/2.0207                          |
| zlib             | zlib/1.2.12, zlib/1.2.13                   |
| zstd             | zstd/1.5.2                                 |
