Maintained Software Packages

As of 2018-11-09.
Name
Version
Compiled by
Notes
Intel
GCC
Anaconda 2
4.0.0
Anaconda 3
2.5.0
Autoconf
2.69
Automake
1.15
Autotools
20150215
BamTools
2.4.0
BayeScan
2.1
BCFtools
1.3.1
binutils
2.26
Included in pic-foss compiler toolchain
Bison
3.0.4
Boost
1.61.0
BWA
0.7.15
bzip2
1.0.6
cairo
1.14.6
cairo
1.14.10
CMake
3.5.2
cURL
7.49.1
CUDA
9.1.85
Includes nvcc compiler
Doxygen
1.8.11
ESMF
7.0.0
expat
2.2.0
FASTX-Toolkit
0.0.14
FFTW
3.3.4
Included in pic-foss compiler toolchain
flex
2.6.0
fontconfig
2.12.1
freetype
2.6.5
g2clib
1.4.0
g2lib
1.4.0
GCC
5.4.0
Included in pic-foss compiler toolchain
GDAL
2.1.0
gettext
0.19.8
GLib
2.49.5
GMP
6.1.1
GSL
2.1
gzip
1.6
HDF
4.2.11
HDF5
1.8.17
HTSlib
1.3.1
icc
2016.3.210
Included in pic-intel compiler toolchain
idl
8.4.1
ifort
2016.3.210
Included in pic-intel compiler toolchain
imkl
11.3.3.210
Included in pic-intel compiler toolchain
JasPer
1.900.1
libffi
3.2.1
libgtextutils
0.7
libjpeg-turbo
1.5.0
libpng
1.6.24
libreadline
6.3
libtool
2.4.6
libxml2
2.9.4
M4
1.4.17
makedepend
1.0.5
MATLAB
R2015a
MATLAB
R2015b
MATLAB
R2016a
MATLAB
R2018a
See Matlab Usage for more information on using Matlab on chinook.
Mothur
1.38.1.1
Mothur
1.39.5
NASM
2.12.02
NCL
6.3.0
Binary distribution
ncurses
6.0
netCDF
4.4.1
netCDF-C++4
4.3.0
netCDF-Fortran
4.4.4
OpenBLAS
0.2.18
Included in pic-foss compiler toolchain
PCRE
8.39
Perl
5.22.1
pixman
0.34.0
pkg-config
0.29.1
Python
2.7.12
Python
3.6.9
Use the scl command to enable this version
Rosetta
3.8
SAMtools
1.3.1
ScaLAPACK
2.0.2
Included in pic-foss compiler toolchain
Singularity
2.2
SQLite
3.13.0
Szip
2.1
Tcl
8.6.5
Tk
8.6.5
UDUNITS
2.2.20
VCFtools
0.1.14
X11
20160819
XZ
5.2.2
zlib
1.2.8