Maintained Software Packages
This is a list of the all RCS installed software and toolchains. To learn more about a specific package please run "module spider PACKAGENAME", which will give you information about the package as well as what other modules must be loaded to get access to the software.
| Name | Versions |
|---|---|
ANTLR | ANTLR/2.7.7-Java-11, ANTLR/2.7.7-Java-17 |
AUGUSTUS | AUGUSTUS/3.5.0 |
Autoconf | Autoconf/2.71 |
Automake | Automake/1.16.5 |
Automake | GNU Standards-compliant Makefile generator |
Autotools | Autotools/20220317 |
BamTools | BamTools/2.5.2 |
BCFtools | BCFtools/1.17 |
binutils | binutils/2.38, binutils/2.40 |
binutils | GNU binary utilities |
BioPerl | BioPerl/1.7.8 |
Bison | Bison/3.8.2 |
BLAST+ | BLAST+/2.13.0 |
BLIS | BLIS/0.9.0 |
Boost | Boost/1.79.0 |
Boost.MPI | Boost.MPI/1.79.0 |
Brotli | Brotli/1.0.9 |
BWA | BWA/0.7.17 |
bzip2 | bzip2/1.0.8 |
cairo | cairo/1.17.4 |
CDO | CDO/2.0.5, CDO/2.2.2 |
CMake | CMake/3.23.1, CMake/3.26.3 |
CUDA | CUDA/11.7.0 |
cURL | cURL/7.83.0, cURL/8.0.1 |
cutadapt | cutadapt/4.2 |
DB_File | DB_File/1.858 |
Doxygen | Doxygen/1.9.7 |
ecBuild | ecBuild/3.8.0 |
ecCodes | ecCodes/2.24.2, ecCodes/2.31.0 |
ESMF | ESMF/8.3.0, ESMF/8.4.2 |
Exonerate | Exonerate/2.4.0 |
expat | expat/2.4.8, expat/2.5.0 |
FFTW | FFTW/3.3.10 |
FFTW.MPI | FFTW.MPI/3.3.10 |
flex | flex/2.6.4 |
FlexiBLAS | FlexiBLAS/3.2.0 |
fontconfig | fontconfig/2.14.0, fontconfig/2.14.2 |
foss | foss/2022a |
gaussian | gaussian/16.C.01 |
GCC | GCC/11.3.0, GCC/12.3.0 |
GCCcore | GCCcore/11.3.0, GCCcore/12.3.0 |
GDAL | GDAL/3.5.0 |
GeneMark-ET | GeneMark-ET/4.71 |
GEOS | GEOS/3.10.3 |
gettext | gettext/0.21 |
Ghostscript | Ghostscript/10.0.0 |
git | git/2.36.0-nodocs |
GLib | GLib/2.72.1 |
gompi | gompi/2022a |
groff | groff/1.22.4 |
GSL | GSL/2.7 |
gzip | gzip/1.12 |
h5py | h5py/3.7.0 |
HarfBuzz | HarfBuzz/5.3.1 |
HDF | HDF/4.2.15 |
HDF5 | HDF5/1.13.1, HDF5/1.14.0 |
help2man | help2man/1.49.2 |
HMMER | HMMER/3.3.2 |
HTSlib | HTSlib/1.17 |
hwloc | hwloc/2.7.1 |
iimpi | iimpi/2023a |
ImageMagick | ImageMagick/7.1.0-53 |
imkl | imkl/2023.1.0 |
imkl-FFTW | imkl-FFTW/2022.1.0, imkl-FFTW/2023.1.0 |
impi | impi/2021.6.0, impi/2021.9.0 |
intel | intel/2022a, intel/2023a |
intel-compilers | intel-compilers/2023.1.0 |
ISA-L | ISA-L/2.30.0 |
JasPer | JasPer/2.0.33, JasPer/4.0.0 |
Java | Java/11.0.16, Java/17.0.6 |
LAME | LAME/3.100 |
LAPACK | LAPACK/3.10.1 |
libaec | libaec/1.0.6 |
libdap | libdap/3.20.8, libdap/3.20.11 |
libfabric | libfabric/1.15.1 |
libffi | libffi/3.4.2 |
libgeotiff | libgeotiff/1.7.1 |
libgit2 | libgit2/1.5.0 |
libreadline | libreadline/8.1.2 |
LibTIFF | LibTIFF/4.3.0, LibTIFF/4.5.0 |
libtool | libtool/2.4.7 |
LittleCMS | LittleCMS/2.14 |
LLVM | LLVM/15.0.5 |
LMDB | LMDB/0.9.29 |
lpsolve | lpsolve/5.5.2.11 |
lz4 | lz4/1.9.3, lz4/1.9.4 |
M4 | M4/1.4.19 |
MAKER | MAKER/3.01.04 |
MATLAB | MATLAB/R2023b |
METIS | METIS/5.1.0 |
MPFR | MPFR/4.2.0 |
mpi4py | mpi4py/3.1.4 |
ncbi-blast+ | ncbi-blast+/2.8.1 |
NCO | NCO/5.0.3, NCO/5.1.3 |
ncurses | ncurses/6.2, ncurses/6.3, ncurses/6.4 |
ncview | ncview/2.1.8 |
netCDF | netCDF/4.9.0, netCDF/4.9.2 |
netCDF-C++4 | netCDF-C++4/4.3.1 |
netCDF-Fortran | netCDF-Fortran/4.5.4, netCDF-Fortran/4.6.1 |
nodejs | nodejs/18.12.1 |
numactl | numactl/2.0.14 |
OpenBLAS | OpenBLAS/0.3.20 |
OpenMPI | OpenMPI/4.1.4 |
OpenSSL | OpenSSL/1.1 |
Pango | Pango/1.50.12 |
ParaView | ParaView/5.11.1 |
PCRE2 | PCRE2/10.40 |
Perl | Perl/5.34.1, Perl/5.36.1 |
Perl-bundle-CPAN | Perl-bundle-CPAN/5.36.1 |
pigz | pigz/2.7 |
pkgconf | pkgconf/1.8.0, pkgconf/1.9.5 |
pkgconfig | pkgconfig/1.5.5-python |
pmi | pmi/pmix-x86_64 |
PMIx | PMIx/4.1.2 |
PROJ | PROJ/9.0.0, PROJ/9.2.0 |
pybind11 | pybind11/2.9.2 |
Python | Python/3.10.4, Python/3.11.3 |
python-isal | python-isal/1.1.0 |
R | R/4.2.2 |
RepeatMasker | RepeatMasker/4.1.4 |
RMBlast | RMBlast/2.13.0 |
Rust | Rust/1.60.0 |
SAMtools | SAMtools/1.17 |
ScaLAPACK | ScaLAPACK/2.2.0-fb |
SciPy-bundle | SciPy-bundle/2022.05 |
SCons | SCons/4.2.0 |
Serf | Serf/1.3.9 |
sintr | sintr/1.0 |
slurm | slurm/22.05.4 |
SNAP-HMM | SNAP-HMM/20221022 |
SQLite | SQL Database Engine in a C Library |
SQLite | SQLite/3.38.3, SQLite/3.42.0 |
Subversion | Subversion/1.14.1 |
SuiteSparse | SuiteSparse/5.13.0-METIS-5.1.0 |
SWIG | SWIG/4.0.2 |
Szip | Szip/2.1.1 |
Tk | Tk/8.6.12 |
totalview | totalview/2023.1.6 |
TRF | TRF/4.09.1 |
UCX | UCX/1.12.1 |
UDUNITS | UDUNITS/2.2.28 |
UnZip | UnZip/6.0 |
util-linux | util-linux/2.38, util-linux/2.39 |
Vivado | Vivado/2023.2 |
X11 | X11/20220504, X11/20230603 |
XML-LibXML | XML-LibXML/2.0207 |
zlib | zlib/1.2.12, zlib/1.2.13 |
zstd | zstd/1.5.2 |
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