Maintained Software Packages
As of 2018-11-09.
Name | Version | Compiled by | Notes | |
Intel | GCC | | | |
Anaconda 2 | 4.0.0 | | | |
Anaconda 3 | 2.5.0 | | | |
Autoconf | 2.69 | ✓ | | |
Automake | 1.15 | ✓ | | |
Autotools | 20150215 | ✓ | | |
BamTools | 2.4.0 | ✓ | | |
BayeScan | 2.1 | ✓ | | |
BCFtools | 1.3.1 | ✓ | | |
binutils | 2.26 | | ✓ | Included in pic-foss compiler toolchain |
Bison | 3.0.4 | ✓ | ✓ | |
Boost | 1.61.0 | ✓ | | |
BWA | 0.7.15 | ✓ | | |
bzip2 | 1.0.6 | ✓ | | |
cairo | 1.14.6 | ✓ | | |
cairo | 1.14.10 | ✓ | ✓ | |
CMake | 3.5.2 | ✓ | | |
cURL | 7.49.1 | ✓ | | |
CUDA | 9.1.85 | | | Includes nvcc compiler |
Doxygen | 1.8.11 | ✓ | | |
ESMF | 7.0.0 | ✓ | | |
expat | 2.2.0 | ✓ | | |
FASTX-Toolkit | 0.0.14 | ✓ | | |
FFTW | 3.3.4 | | ✓ | Included in pic-foss compiler toolchain |
flex | 2.6.0 | ✓ | ✓ | |
fontconfig | 2.12.1 | ✓ | ✓ | |
freetype | 2.6.5 | ✓ | ✓ | |
g2clib | 1.4.0 | ✓ | | |
g2lib | 1.4.0 | ✓ | | |
GCC | 5.4.0 | | | Included in pic-foss compiler toolchain |
GDAL | 2.1.0 | ✓ | | |
gettext | 0.19.8 | ✓ | | |
GLib | 2.49.5 | ✓ | ✓ | |
GMP | 6.1.1 | ✓ | | |
GSL | 2.1 | ✓ | | |
gzip | 1.6 | ✓ | | |
HDF | 4.2.11 | ✓ | | |
HDF5 | 1.8.17 | ✓ | | |
HTSlib | 1.3.1 | ✓ | | |
icc | 2016.3.210 | | | Included in pic-intel compiler toolchain |
idl | 8.4.1 | | | |
ifort | 2016.3.210 | | | Included in pic-intel compiler toolchain |
imkl | 11.3.3.210 | ✓ | | Included in pic-intel compiler toolchain |
JasPer | 1.900.1 | ✓ | | |
libffi | 3.2.1 | ✓ | | |
libgtextutils | 0.7 | ✓ | | |
libjpeg-turbo | 1.5.0 | ✓ | | |
libpng | 1.6.24 | ✓ | | |
libreadline | 6.3 | ✓ | | |
libtool | 2.4.6 | ✓ | | |
libxml2 | 2.9.4 | ✓ | | |
M4 | 1.4.17 | ✓ | ✓ | |
makedepend | 1.0.5 | ✓ | | |
MATLAB | R2015a | | | |
MATLAB | R2015b | | | |
MATLAB | R2016a | | | |
MATLAB | R2018a | | | |
Mothur | 1.38.1.1 | ✓ | | |
Mothur | 1.39.5 | ✓ | | |
NASM | 2.12.02 | ✓ | | |
NCL | 6.3.0 | | ✓ | Binary distribution |
ncurses | 6.0 | ✓ | | |
netCDF | 4.4.1 | ✓ | | |
netCDF-C++4 | 4.3.0 | ✓ | | |
netCDF-Fortran | 4.4.4 | ✓ | | |
OpenBLAS | 0.2.18 | | ✓ | Included in pic-foss compiler toolchain |
PCRE | 8.39 | ✓ | ✓ | |
Perl | 5.22.1 | ✓ | ✓ | |
pixman | 0.34.0 | ✓ | ✓ | |
pkg-config | 0.29.1 | ✓ | ✓ | |
Python | 2.7.12 | ✓ | | |
Python | 3.6.9 | | | Use the scl command to enable this version |
Rosetta | 3.8 | ✓ | ✓ | |
SAMtools | 1.3.1 | ✓ | | |
ScaLAPACK | 2.0.2 | | ✓ | Included in pic-foss compiler toolchain |
Singularity | 2.2 | | ✓ | |
SQLite | 3.13.0 | ✓ | | |
Szip | 2.1 | ✓ | | |
Tcl | 8.6.5 | ✓ | | |
Tk | 8.6.5 | ✓ | | |
UDUNITS | 2.2.20 | ✓ | | |
VCFtools | 0.1.14 | ✓ | | |
X11 | 20160819 | ✓ | ✓ | |
XZ | 5.2.2 | ✓ | | |
zlib | 1.2.8 | ✓ | ✓ | |
Last modified 3yr ago